PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG007964.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family TCP
Protein Properties Length: 414aa    MW: 45321 Da    PI: 6.9719
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG007964.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.71.2e-35351552103
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnsssg 88 
                  +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak++i+el+++           +      +++++   s+++++++
  CCG007964.1  35 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKASIDELAKLpawdpttagfnP------TTSKTTTRSTQQQNIS 126
                  79**************************************************************666654443221......2333344444444444 PP

          TCP  89 ..............kaaksaakskksqks 103
                                ++a++a + ++ q++
  CCG007964.1 127 dereyqlsmenvaaSKAAAAIEVQNMQQQ 155
                  34445555555543222222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-3435155IPR005333Transcription factor, TCP
PROSITE profilePS5136933.8773795IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MGESHHQAAT SSRLGIRNTV GEIVEVQGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH  60
TAIQFYDVQD RLGYDRPSKA VDWLIKKAKA SIDELAKLPA WDPTTAGFNP TTSKTTTRST  120
QQQNISDERE YQLSMENVAA SKAAAAIEVQ NMQQQMAENP NCSSGFLPPS LDSDAIADTI  180
KTFFPMGAST ETSSPTIQFQ NYPPDLMSRT SSQSQDLRLS LQSFQEPILL QHQAHHHGHQ  240
AQNEHQVLFS GTTAHYLGLD GSSSGWSEQH HAPEINRFQR NLVAWNAAGG GGGGVGGGGF  300
FLNTPLPPLQ TMSPSPLIQP FFGQNQFFSQ RGPLQSSNTP SVRAWIDPAI TPDHHEQQQI  360
PQIYHQQTAI SGIGFTASGG EFYGFRVPAR IQGEDEEHDG IHNKPSSASS DSRH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000248.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR51e-108TCP4_ARATH; Transcription factor TCP4
TrEMBLU5GSU30.0U5GSU3_POPTR; Uncharacterized protein
STRINGPOPTR_0001s38480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-93TCP family protein